Versions in this module Expand all Collapse all v1 v1.0.6 Aug 24, 2018 Changes in this version + var X0 = utils.Intern("X0") + var X1 = utils.Intern("X1") + var XG = utils.Intern("XG") + var XM = utils.Intern("XM") + var XO = utils.Intern("XO") + func AddOrReplaceReadGroup(readGroup utils.StringMap) sam.Filter + func AddPGLine(newPG utils.StringMap) sam.Filter + func AddREFID(header *sam.Header) sam.AlignmentFilter + func CleanSam(header *sam.Header) sam.AlignmentFilter + func KeepOptionalFields(tags []string) sam.Filter + func MarkDuplicates(deterministic bool) sam.Filter + func RemoveDuplicateReads(_ *sam.Header) sam.AlignmentFilter + func RemoveMappingQualityLessThan(mq int) sam.Filter + func RemoveNonExactMappingReads(_ *sam.Header) sam.AlignmentFilter + func RemoveNonExactMappingReadsStrict(header *sam.Header) sam.AlignmentFilter + func RemoveNonOverlappingReads(bed *bed.Bed) sam.Filter + func RemoveOptionalFields(tags []string) sam.Filter + func RemoveOptionalReads(header *sam.Header) sam.AlignmentFilter + func RemoveUnmappedReads(_ *sam.Header) sam.AlignmentFilter + func RemoveUnmappedReadsStrict(_ *sam.Header) sam.AlignmentFilter + func RenameChromosomes(header *sam.Header) sam.AlignmentFilter + func ReplaceReferenceSequenceDictionary(dict []utils.StringMap) sam.Filter + func ReplaceReferenceSequenceDictionaryFromSamFile(samFile string) (f sam.Filter, err error)