index

May 22, 2014

Changes in this version

+ func CreateSubsetNodeIndexes(s *subset, cofile string, ofile string, ifile string) (coCount int64, oCount int64, oSize int64, oFormat string, err error)

May 15, 2014

Changes in this version

type Idx

+ func (i *Idx) GetLength() int64

type Index

+ GetLength func() int64

Mar 14, 2014

Changes in this version

type Idx

+ func (i *Idx) Range(part string) (recs [][]int64, err error)

type Index

+ Range func(string) ([][]int64, error)

Jan 30, 2014

Changes in this version

+ var Indexers = map[string]indexerFunc

+ func CreateBamIndex(bamFile string) (err error)

+ func CreateColumnIndex(c *column, column int, ofile string) (count int64, err error)

+ func CreateSubsetIndex(s *subset, ofile string, ifile string) (count int64, err error)

+ func Has(t string) bool

+ func LoadBamIndex(bamFile string) (err error)

+ func NewColumnIndexer(f *os.File) column

+ func NewSubsetIndexer(f *os.File) subset

+ func NewVirtual(t string, p string, s int64, c int64) *vIndex

+ func SizePart(part string, v *vIndex) (pos int64, length int64, err error)

+ func UnLoadBamIndex(bamFile string) (err error)

+ type Idx struct

+ Idx [][]int64

+ Length int

+ T string

+ func New() *Idx

+ func (i *Idx) Append(rec []int64)

+ func (i *Idx) Load(file string) (err error)

+ func (i *Idx) Part(part string) (pos int64, length int64, err error)

+ func (i *Idx) Set(inter map[string]interface{})

+ func (i *Idx) Type() string

+ type Index interface

+ Append func([]int64)

+ Load func(string) error

+ Part func(string) (int64, int64, error)

+ Set func(map[string]interface{})

+ Type func() string

+ type Indexer interface

+ Close func() error

+ Create func(string) (int64, error)

+ func NewBaiIndexer(f *os.File) Indexer

+ func NewChunkRecordIndexer(f *os.File) Indexer

+ func NewLineIndexer(f *os.File) Indexer

+ func NewRecordIndexer(f *os.File) Indexer

+ func NewSizeIndexer(f *os.File) Indexer