datasets

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v0.0.0-...-e8a583a Latest Latest Go to latest Published: Sep 8, 2021 License: MIT Imports: 3 Imported by: 0

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Repository

github.com/allyourbasepair/rbscalculator

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Open Source Insights

README ¶

This folder contains the datasets used to create a RBS Calculator model.

source contains the 1014IC and Flow-Seq datasets. It is not used, but is included incase we'd like to regenerate the train dataset.

train - To create an accurate model for the RBS calculator, we need high quality data which includes the delimitation of the 5' UTR and CDS regions of the mRNA sequences. 67 sequences from the 1014IC dataset didn't contain this information so they were removed. Apart from this, train is a copy of source.

salis_v2_1.xlsx contains the predicted output of the sequences in the train dataset from Salis' RBS Calculator v2.1. This file is included to aid in the initial development of our RBS Calculator. The excel file also includes a sheet to compare the output from our RBS calculator with the results from the RBS Calculator v2.1.

1014IC: This dataset consists of 1014 individually characterized mRNA sequences. This dataset has been taken from Supplementary Data S1 (sb0c00394_si_002.xlsx) available at: https://pubs.acs.org/doi/10.1021/acssynbio.0c00394

Documentation ¶

Constants ¶

This section is empty.

Variables ¶

View Source

var EmbeddedDatasetsDirectory embed.FS

Functions ¶

This section is empty.

Types ¶

type DatasetColumn ¶

type DatasetColumn struct {
	Header string
	Idx    int
}

DatasetColumn represents a column in a dataset. This is used to keep dataset columns in the output CSV when generating a CSV with computed properties.

Source Files ¶

View all Source files

datasets.go

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